- Institute of African & Asian Studies
- Institute of Building and Roads Reserach
- Confucius Institute
- Institute of Desertification and Desert Cultivation Studies
- Development Studies and Research Institute
- Institute of Endemic Diseases
- Institute of Environmental Studies
- Peace Research Institute
- Institute of Prof. Abdalla ElTayeb for Arabic Language
- Institute For Studies and Promotion of Animal Exports
- Institute for the Studies of Public Administration and Federalism Governance
- English Language Institute